| Group | Team | P | W | D | L | GD | PTS |
|---|---|---|---|---|---|---|---|
| 2. Liga |  Tatran Presov |
12 | 9 | 1 | 2 | 13 | 28 |
| 2. Liga |  Zlate Moravce |
12 | 8 | 2 | 2 | 15 | 26 |
| 2. Liga |  Povazska Bystrica |
12 | 7 | 3 | 2 | 10 | 24 |
| 2. Liga |  Puchov |
12 | 7 | 2 | 3 | 9 | 23 |
| 2. Liga |  Lokomotiva Zvolen |
12 | 6 | 1 | 5 | 3 | 19 |
| 2. Liga |  FC Petrzalka 1898 |
12 | 4 | 5 | 3 | 1 | 17 |
| 2. Liga |  Liptovsky Mikulas |
12 | 4 | 4 | 4 | 4 | 16 |
| 2. Liga |  Zilina B |
12 | 4 | 2 | 6 | -4 | 14 |
| 2. Liga |  FC STK 1914 Samorin |
12 | 4 | 2 | 6 | -5 | 14 |
| 2. Liga |  Slovan Bratislava B |
12 | 3 | 4 | 5 | -5 | 13 |
| 2. Liga |  Stara Lubovna |
12 | 3 | 2 | 7 | -4 | 11 |
| 2. Liga |  FK Pohronie |
12 | 3 | 2 | 7 | -8 | 11 |
| 2. Liga |  Humenne |
12 | 2 | 4 | 6 | -14 | 10 |
| 2. Liga |  Malzenice |
12 | 2 | 2 | 8 | -15 | 8 |
- P: Played
- W: Wins
- D: Draws
- L: Losses
- GD: Goal Difference
- PTS: Points
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